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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
62
ATAC-seq
44
ChIP-seq
11
snATAC-seq
7
DNase-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
82
DNA accessibility
44
DNA binding
6
DNA methylation
4
3D chromatin structure
Target of assay
histone
73
histone modification
41
broad histone mark
32
narrow histone mark
29
control
17
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
120
July, 2018
107
August, 2017
39
November, 2019
37
May, 2021
24
May, 2022
21
October, 2018
18
February, 2023
8
January, 2021
7
March, 2020
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
1
August, 2022
1
February, 2020
1
May, 2019
Available data
370
bam
308
bigWig
275
tsv
171
fastq
61
bed narrowPeak
19
bigBed narrowPeak
15
bed bed3+
8
bed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
2
tagAlign
1
bedpe
Organism
431
Homo sapiens
Biosample type
432
tissue
288
primary cell
73
cell line
2
in vitro differentiated cells
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
213
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
404
AMP
28
T1D
Genome assembly (visualization)
348
hg19
327
GRCh38
Lab
369
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
6
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
432 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
58
20
7
1
3
4
1
1
body of pancreas
3
4
18
4
2
2
pancreas
2
4
4
2
1
2
1
1
1
endocrine pancreas
2
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