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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
4
ChIP-seq
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
174
DNA accessibility
48
DNA methylation
4
DNA binding
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
134
May, 2022
88
February, 2023
59
September, 2020
57
May, 2020
45
February, 2021
22
May, 2021
8
January, 2021
7
August, 2020
2
October, 2019
1
November, 2018
1
September, 2018
Available data
183
fastq
153
zippedFastqFolder
bam
18
tsv
17
bigWig
7
bed bed3+
7
bed broadPeak
7
bed narrowPeak
7
bigBed broadPeak
7
bigBed narrowPeak
2
csv
hic
1
tagAlign
Organism
424
Homo sapiens
Biosample type
763
tissue
424
primary cell
70
in vitro differentiated cells
59
cell line
7
stem cell
Organ
151
epithelium
149
pancreas
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
Project
321
HPAP
79
AMP
24
T1D
Genome assembly (visualization)
hg19
10
GRCh38
Lab
321
Klaus Kaestner, Upenn
79
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
27
audit script error
7
inconsistent ontology term
files.file_type!
bam
hic
assembly!
hg19
BIOSAMPLE
ASSAY
424 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
ChIP-seq
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
2
CD4-positive, alpha-beta memory T cell
22
macrophage
11
1
peripheral blood mononuclear cell
8
monocyte
1
1
1
1
pancreatic acinar cell
4
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
neutrophil
1
1
1
oligodendrocyte
3
CD4-positive, alpha-beta T cell
2
pancreatic cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
erythroblast
1
inflammatory macrophage
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
megakaryocyte
1
naive B cel
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
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