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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
4
WGBS
3
ATAC-seq
3
total RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
37
DNA binding
4
DNA methylation
3
DNA accessibility
3
Transcription
Target of assay
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
5
control
Date released
40
August, 2017
2
February, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
Available data
bam
481
bigWig
457
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
48
Homo sapiens
Biosample type
49
tissue
38
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
200
kidney
178
heart
92
bone element
73
pancreas
72
liver
53
eye
49
connective tissue
48
adipose tissue
45
blood vessel
45
vasculature
39
artery
39
brain
36
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
49
AMP-T2D consortium
files.file_type!
bam
hic
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
WGBS
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
1
3
1
1
subcutaneous adipose tissue
1
1
islet of Langerhans
1
omental fat pad
1
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