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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
3
ATAC-seq
3
Hi-C
1
pCHi-C
Assay category
14
DNA binding
3
3D chromatin structure
3
DNA accessibility
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
15
August, 2021
2
March, 2020
1
February, 2021
1
January, 2018
1
November, 2019
1
October, 2019
Available data
517
bigWig
bam
400
bed narrowPeak
367
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
21
Homo sapiens
Biosample type
107
tissue
54
primary cell
33
in vitro differentiated cells
21
cell line
Organ
16
liver
4
pancreas
3
epithelium
1
blood
1
bodily fluid
Project
21
AMP
Genome assembly (visualization)
21
hg19
1
GRCh38
Lab
15
Bing Ren, UCSD
6
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bam
organ_slims!
stomach
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
ATAC-seq
Hi-C
pCHi-C
cell line
HepG2
14
1
1
EndoC_BH1
2
1
GM12878
1
Panc1
1
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