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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
1
3D chromatin structure
1
DNA methylation
Date released
2
July, 2019
1
May, 2021
Available data
bam
32
bigWig
17
bed narrowPeak
15
bigBed narrowPeak
15
tsv
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
3
Homo sapiens
Biosample type
49
tissue
38
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
164
epithelium
152
pancreas
8
blood
8
bodily fluid
5
kidney
5
vasculature
4
blood vessel
4
brain
3
connective tissue
2
liver
2
vein
1
bone element
1
bone marrow
1
eye
1
heart
1
musculature of body
Project
2
AMP
1
T1D
Genome assembly (visualization)
2
hg19
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
3 results
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Hi-C
RRBS
pCHi-C
primary cell
adult endothelial progenitor cell
1
brain pericyte
1
cardiac fibroblast
1
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