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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
Assay category
53
DNA binding
Target of assay
110
histone
110
histone modification
56
broad histone mark
53
narrow histone mark
46
transcription factor
35
control
11
RNA binding protein
3
chromatin remodeller
Date released
16
August, 2017
11
December, 2017
11
May, 2021
8
February, 2018
7
August, 2021
Available data
39
bam
38
bed narrowPeak
38
bigWig
31
fastq
12
tagAlign
5
bigBed narrowPeak
4
bed bed3+
Organism
53
Homo sapiens
Biosample type
322
tissue
106
primary cell
53
in vitro differentiated cells
13
cell line
1
stem cell
Organ
16
connective tissue
6
embryo
6
epithelium
5
liver
1
pancreas
Project
53
AMP
Genome assembly (visualization)
38
GRCh38
38
hg19
Lab
43
AMP-T2D consortium
10
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
bed bedgraph
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
in vitro differentiated cells
adipocyte
16
embryonic stem cell
11
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
definitive endodermal cell
2
primitive gut cell
2
Posterior foregut
1
endocrine cell
1
pancreatic PP cell
1
posterior foregut
1
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