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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
4
pCHi-C
4
total RNA-seq
2
ATAC-seq
1
WGBS
Assay category
61
DNA binding
4
Transcription
2
DNA accessibility
1
DNA methylation
Target of assay
57
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
66
bam
64
bigWig
61
fastq
57
bed narrowPeak
56
bigBed narrowPeak
9
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
72
Homo sapiens
Biosample type
72
cell line
66
tissue
8
in vitro differentiated cells
4
stem cell
2
primary cell
Organ
46
liver
15
blood
15
bodily fluid
5
epithelium
5
pancreas
2
kidney
1
mammary gland
Project
69
AMP
3
T1D
Genome assembly (visualization)
62
GRCh38
61
hg19
Lab
72
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bedgraph
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
pCHi-C
total RNA-seq
ATAC-seq
WGBS
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
1
2
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
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