Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
73
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
62
control
9
transcription factor
2
RNA binding protein
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
66
November, 2017
8
January, 2019
5
November, 2018
1
December, 2018
Available data
582
bam
522
bigWig
427
fastq
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
80
Homo sapiens
Biosample type
320
primary cell
208
tissue
80
cell line
48
in vitro differentiated cells
2
stem cell
Organ
74
liver
6
blood
6
bodily fluid
Project
80
AMP
Genome assembly (visualization)
24
hg19
6
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
80 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
67
5
1
1
GM12878
6
See all biosamples
Download