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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
426
ChIP-seq
Assay category
426
DNA binding
113
Transcription
30
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
317
transcription factor
89
recombinant protein
80
control
61
RNA binding protein
26
chromatin remodeller
24
histone
24
histone modification
13
narrow histone mark
11
broad histone mark
1
other context
1
other post-translational modification
Date released
257
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
465
bam
420
fastq
411
bigWig
392
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
bigBed broadPeak
20
tagAlign
3
tar
Organism
426
Homo sapiens
Biosample type
900
tissue
426
cell line
258
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
320
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
424
AMP
2
T1D
Genome assembly (visualization)
349
hg19
302
GRCh38
Lab
408
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
426 results
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Clear Filters
ChIP-seq
cell line
HepG2
320
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
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