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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
Assay category
177
DNA binding
131
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
98
histone
98
histone modification
49
broad histone mark
49
transcription factor
48
narrow histone mark
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
67
August, 2017
43
December, 2017
43
May, 2021
24
February, 2018
August, 2021
Available data
126
bam
120
fastq
102
bigWig
97
bed narrowPeak
20
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
177
Homo sapiens
Biosample type
907
tissue
466
cell line
275
primary cell
177
in vitro differentiated cells
3
stem cell
Organ
67
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
Project
177
AMP
Genome assembly (visualization)
107
GRCh38
107
hg19
Lab
140
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
files.file_type!
cool
month_released!
August, 2021
BIOSAMPLE
ASSAY
177 results
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ChIP-seq
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
pancreatic endoderm
18
hepatocyte
15
definitive endodermal cell
8
primitive gut cell
8
Posterior foregut
5
Hepatic endoderm
4
cardiomyocytes
3
endocrine cell
3
pancreatic PP cell
3
posterior foregut
3
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