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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
64
ChIP-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
64
DNA binding
Target of assay
24
transcription factor
22
histone
22
histone modification
18
control
11
broad histone mark
11
narrow histone mark
7
recombinant protein
2
RNA binding protein
Date released
23
October, 2019
18
August, 2021
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
465
bam
fastq
411
bigWig
392
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
64
Homo sapiens
Biosample type
687
tissue
185
primary cell
78
in vitro differentiated cells
64
cell line
Organ
28
pancreas
18
liver
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
62
AMP
2
T1D
Genome assembly (visualization)
45
hg19
31
GRCh38
Lab
46
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
files.file_type!
fastq
organ_slims!
ureter
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
cell line
HepG2
18
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
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