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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
Assay category
86
DNA binding
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
42
broad histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
25
August, 2017
24
December, 2017
20
May, 2021
16
February, 2018
1
August, 2021
Available data
79
bam
78
bed narrowPeak
78
bigWig
65
fastq
tagAlign
12
bigBed narrowPeak
8
bed bed3+
Organism
86
Homo sapiens
Biosample type
441
tissue
139
primary cell
86
in vitro differentiated cells
27
cell line
2
stem cell
Organ
25
connective tissue
14
epithelium
12
embryo
12
liver
Project
86
AMP
Genome assembly (visualization)
64
GRCh38
64
hg19
Lab
66
AMP-T2D consortium
20
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
files.file_type!
tagAlign
month_released!
May, 2020
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
in vitro differentiated cells
adipocyte
25
embryonic stem cell
22
hepatocyte
12
pancreatic endoderm
10
definitive endodermal cell
4
primitive gut cell
4
Hepatic endoderm
2
Posterior foregut
2
endocrine cell
2
posterior foregut
2
neural progenitor cell
1
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