Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
19
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
17
May, 2021
15
November, 2019
6
November, 2020
2
August, 2021
2
March, 2020
1
February, 2023
1
October, 2019
Available data
51
bam
50
bigWig
tsv
15
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
43
Homo sapiens
Biosample type
290
primary cell
44
cell line
22
in vitro differentiated cells
12
tissue
Organ
386
liver
61
blood
61
bodily fluid
58
pancreas
44
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
13
kidney
Project
42
AMP
2
T1D
Genome assembly (visualization)
17
hg19
15
GRCh38
Lab
38
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
42
inconsistent ontology term
files.file_type!
tsv
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
18
15
6
2
1
1
glomerular visceral epithelial cell
1
See all biosamples
Download