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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
18
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
28
DNA binding
19
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
10
broad histone mark
9
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
17
May, 2021
15
November, 2019
15
October, 2019
6
November, 2020
2
August, 2021
2
March, 2020
1
February, 2023
Available data
63
bam
56
bigWig
tsv
21
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
57
Homo sapiens
Biosample type
238
primary cell
230
tissue
58
cell line
3
in vitro differentiated cells
Organ
386
liver
61
blood
61
bodily fluid
58
pancreas
44
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
13
kidney
Project
56
AMP
2
T1D
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
52
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
42
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
tsv
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
15
18
6
2
1
1
Panc1
13
1
1
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