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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
71
ATAC-seq
53
total RNA-seq
41
WGBS
3
Hi-C
1
DNase-seq
1
RRBS
Assay category
80
DNA binding
72
DNA accessibility
53
Transcription
42
DNA methylation
3
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
14
control
Date released
80
May, 2022
46
September, 2018
41
August, 2017
37
February, 2023
19
September, 2020
11
June, 2019
7
August, 2020
5
September, 2017
3
October, 2022
1
July, 2019
Available data
258
fastq
207
bam
203
bigWig
tsv
80
zippedFastqFolder
77
bed narrowPeak
31
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
250
Homo sapiens
Biosample type
305
tissue
250
primary cell
58
cell line
3
in vitro differentiated cells
Organ
290
epithelium
238
pancreas
35
vasculature
30
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
146
HPAP
104
AMP
Genome assembly (visualization)
99
GRCh38
93
hg19
Lab
146
Klaus Kaestner, Upenn
104
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
tsv
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
Hi-C
DNase-seq
RRBS
primary cell
pancreatic alpha cell
13
35
42
25
1
pancreatic beta cell
13
23
11
16
1
pancreatic endocrine cell
23
pancreatic acinar cell
8
9
1
pancreatic ductal cell
13
4
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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