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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
3
pCHi-C
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
Assay category
42
DNA binding
31
Transcription
21
DNA accessibility
DNA methylation
4
3D chromatin structure
DNA sequencing
Target of assay
23
histone
23
histone modification
13
broad histone mark
12
transcription factor
10
narrow histone mark
7
control
1
RNA binding protein
Date released
40
May, 2022
30
August, 2021
24
August, 2017
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
July, 2019
1
May, 2020
1
November, 2017
Available data
bam
621
bigWig
462
fastq
441
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
Organism
103
Homo sapiens
Biosample type
68
tissue
34
cell line
1
primary cell
Organ
208
pancreas
206
kidney
178
heart
154
epithelium
103
liver
93
bone element
86
connective tissue
53
eye
50
blood vessel
50
vasculature
45
adipose tissue
41
brain
39
artery
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
38
hg19
Lab
40
Karen Mohlke, UNC
33
AMP-T2D consortium
30
Bing Ren, UCSD
files.file_type!
bam
assay_slims!
DNA sequencing
DNA methylation
BIOSAMPLE
ASSAY
103 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
STARR-seq
DNase-seq
single cell RNA-seq
tissue
liver
23
20
20
1
1
1
right lobe of liver
1
1
cell line
HepG2
19
9
2
2
2
primary cell
endothelial cell of hepatic sinusoid
1
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