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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
single cell RNA-seq
148
total RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
328
Transcription
269
DNA accessibility
216
DNA binding
24
3D chromatin structure
21
DNA methylation
1
DNA sequencing
Date released
165
August, 2021
47
September, 2023
25
February, 2020
21
May, 2022
18
February, 2023
14
October, 2019
9
April, 2020
6
February, 2021
6
May, 2021
4
July, 2018
4
March, 2023
4
May, 2023
3
December, 2019
2
March, 2020
Available data
1292
tsv
bam
1148
bigWig
123
fastq
72
txt
6
csv
Organism
324
Homo sapiens
Biosample type
304
tissue
primary cell
11
cell line
11
in vitro differentiated cells
2
stem cell
Organ
113
kidney
96
heart
31
liver
19
eye
14
pancreas
12
brain
9
blood vessel
9
lung
9
vasculature
7
connective tissue
4
artery
4
bone element
4
skeleton
3
adipose tissue
3
limb
3
musculature of body
2
epithelium
1
nerve
1
spinal cord
Project
261
AMP
47
KPMP
9
LungMap
7
T1D
4
community
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
167
AMP-T2D consortium
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
11
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
7
audit script error
5
inconsistent ontology term
files.file_type!
bam
biosample_type!
primary cell
BIOSAMPLE
ASSAY
328 results
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single cell RNA-seq
total RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
64
49
islet of Langerhans
26
liver
1
20
heart left ventricle
18
left cardiac atrium
18
+ See 46 more…
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
cardiomyocytes (cardiac muscle cell)
2
immature adipocyte
2
adipocyte
1
preadipocyte
1
stem cell
SB Ad3.1
1
1
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