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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
12
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
Assay category
12
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Date released
12
February, 2020
5
July, 2019
2
March, 2020
1
February, 2023
1
October, 2019
Available data
50
bigWig
bam
35
bed bed3+
33
bed narrowPeak
33
bigBed narrowPeak
32
bed broadPeak
32
bigBed broadPeak
26
tsv
3
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
21
Homo sapiens
Biosample type
17
tissue
4
primary cell
Organ
237
pancreas
210
kidney
207
epithelium
141
heart
93
bone element
68
liver
52
eye
51
vasculature
50
blood vessel
40
connective tissue
39
artery
21
brain
20
lung
17
musculature of body
13
adipose tissue
9
blood
9
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
6
hg19
Lab
21
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bam
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
21 results
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total RNA-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
tissue
Ammon's horn
1
1
brain
1
1
amygdala
1
anterior cingulate cortex
1
caudate nucleus
1
+ See 10 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
See all biosamples
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