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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
35
ATAC-seq
3
Hi-C
3
pCHi-C
3
total RNA-seq
RRBS
2
WGBS
1
ChIP-seq
Assay category
96
Transcription
35
DNA accessibility
3
3D chromatin structure
2
DNA methylation
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
92
August, 2021
36
February, 2023
5
March, 2020
3
February, 2020
2
July, 2019
1
April, 2019
1
October, 2019
Available data
bam
184
bigWig
168
tsv
151
bed narrowPeak
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
140
Homo sapiens
Biosample type
140
tissue
Organ
255
pancreas
206
kidney
201
epithelium
140
heart
108
liver
93
bone element
90
connective tissue
53
eye
50
blood vessel
50
vasculature
49
adipose tissue
41
brain
39
artery
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
140
AMP
Genome assembly (visualization)
35
GRCh38
4
hg19
Lab
140
AMP-T2D consortium
files.file_type!
bam
assay_title!
RRBS
BIOSAMPLE
ASSAY
140 results
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single cell RNA-seq
ATAC-seq
Hi-C
pCHi-C
total RNA-seq
WGBS
ChIP-seq
tissue
coronary artery
35
1
heart left ventricle
18
1
1
2
1
heart right ventricle
17
1
1
right cardiac atrium
18
1
left cardiac atrium
18
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