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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
41
ChIP-seq
35
ATAC-seq
3
Hi-C
pCHi-C
total RNA-seq
2
RRBS
2
WGBS
Assay category
93
Transcription
41
DNA binding
35
DNA accessibility
4
DNA methylation
3
3D chromatin structure
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
4
July, 2019
2
March, 2020
1
April, 2019
1
October, 2019
Available data
191
bed narrowPeak
155
bigWig
bam
94
bigBed narrowPeak
93
tsv
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
176
Homo sapiens
Biosample type
175
tissue
1
primary cell
Organ
189
pancreas
176
heart
159
kidney
152
epithelium
88
bone element
80
connective tissue
77
liver
47
vasculature
46
blood vessel
44
adipose tissue
37
artery
36
musculature of body
31
eye
29
brain
19
lung
9
blood
9
bodily fluid
5
limb
4
gonad
4
ovary
4
skeleton
2
vein
1
embryo
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
Project
176
AMP
Genome assembly (visualization)
75
GRCh38
6
hg19
Lab
136
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
files.file_type!
bam
assay_title!
pCHi-C
total RNA-seq
BIOSAMPLE
ASSAY
176 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
Hi-C
RRBS
WGBS
tissue
left cardiac atrium
18
40
coronary artery
35
heart left ventricle
18
1
1
1
2
heart right ventricle
17
1
right cardiac atrium
18
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primary cell
cardiac fibroblast
1
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