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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
18
snATAC-seq
pCHi-C
16
ATAC-seq
13
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
70
DNA binding
34
DNA accessibility
13
Transcription
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
83
May, 2021
23
February, 2023
16
January, 2021
Available data
220
bigWig
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
122
Homo sapiens
Biosample type
47
in vitro differentiated cells
43
primary cell
27
tissue
5
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
Project
83
AMP
39
T1D
Genome assembly (visualization)
40
hg19
Lab
686
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
122
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
files.file_type!
bam
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
122 results
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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell
37
5
5
primary cell
CD8-positive, alpha-beta T cell
33
2
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
6
11
5
pancreas
4
1
cell line
EndoC_BH1
3
2
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