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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
81
DNA accessibility
55
Transcription
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
206
Homo sapiens
Biosample type
164
primary cell
28
cell line
15
tissue
Organ
256
pancreas
208
kidney
207
epithelium
139
heart
107
liver
92
bone element
87
connective tissue
50
eye
50
vasculature
49
blood vessel
47
adipose tissue
41
brain
39
artery
38
musculature of body
19
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
4
gonad
4
ovary
2
vein
1
embryo
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
152
HPAP
55
AMP
Genome assembly (visualization)
28
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
49
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
files.file_type!
bam
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
207 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 9 more…
cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
See all biosamples
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