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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
pCHi-C
2
ChIP-seq
Assay category
28
DNA accessibility
19
Transcription
2
DNA binding
DNA methylation
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
31
February, 2023
21
October, 2019
1
February, 2020
Available data
33
bed narrowPeak
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
53
Homo sapiens
Biosample type
53
tissue
Organ
208
pancreas
203
kidney
178
heart
154
epithelium
104
liver
93
bone element
86
connective tissue
53
eye
50
blood vessel
50
vasculature
45
adipose tissue
41
brain
39
artery
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
53
AMP
Genome assembly (visualization)
27
hg19
Lab
53
AMP-T2D consortium
files.file_type!
bam
assay_title!
snDrop-seq
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
53 results
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ATAC-seq
total RNA-seq
pCHi-C
ChIP-seq
tissue
islet of Langerhans
1
14
4
2
retina
15
3
pigmented layer of retina
12
2
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