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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
Assay category
113
Transcription
83
DNA accessibility
DNA methylation
1
3D chromatin structure
Date released
130
August, 2021
47
September, 2023
14
May, 2023
5
February, 2021
3
December, 2019
2
March, 2020
2
October, 2019
Available data
183
bed narrowPeak
bam
131
bigWig
104
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
21
tsv
5
csv
1
hic
Organism
203
Homo sapiens
Biosample type
197
tissue
4
cell line
2
primary cell
Organ
208
pancreas
203
kidney
178
heart
154
epithelium
104
liver
93
bone element
86
connective tissue
53
eye
50
blood vessel
50
vasculature
45
adipose tissue
41
brain
39
artery
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
156
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
1
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
12
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
files.file_type!
bam
assay_title!
snDrop-seq
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
203 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney
75
64
49
6
1
kidney interstitium
1
renal glomerulus
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
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