Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
4
RRBS
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
Assay category
113
Transcription
83
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
130
August, 2021
47
September, 2023
14
May, 2023
5
February, 2021
4
July, 2019
3
December, 2019
2
March, 2020
2
October, 2019
Available data
183
bed narrowPeak
bam
131
bigWig
104
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
21
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
207
Homo sapiens
Biosample type
198
tissue
5
primary cell
4
cell line
Organ
257
pancreas
207
epithelium
207
kidney
182
heart
110
liver
93
bone element
91
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
160
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
5
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
16
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
files.file_type!
bam
assay_title!
snDrop-seq
lab.title!
Anna Gloyn, Oxford
BIOSAMPLE
ASSAY
207 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
DNase-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney
75
64
49
6
1
1
kidney interstitium
1
renal glomerulus
1
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
Download