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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
5
Hi-C
total RNA-seq
2
pCHi-C
1
RRBS
Assay category
35
DNA accessibility
6
Transcription
5
3D chromatin structure
1
DNA methylation
Date released
35
February, 2023
6
August, 2021
4
March, 2020
3
July, 2019
1
October, 2019
Available data
bam
147
bed narrowPeak
113
bigWig
96
bigBed narrowPeak
30
fastq
18
bed broadPeak
18
bigBed broadPeak
14
bed bed3+
8
tsv
6
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
49
Homo sapiens
Biosample type
44
tissue
5
primary cell
Organ
190
pancreas
179
heart
161
kidney
152
epithelium
89
bone element
84
connective tissue
80
liver
48
vasculature
47
blood vessel
46
adipose tissue
37
artery
37
musculature of body
35
eye
31
brain
20
lung
9
blood
9
bodily fluid
5
gonad
5
limb
5
ovary
4
skeleton
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
49
AMP
Genome assembly (visualization)
35
GRCh38
6
hg19
Lab
49
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
49 results
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ATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
RRBS
tissue
coronary artery
35
aorta
4
1
1
pulmonary artery
2
spleen
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
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