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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
79
DNA accessibility
Date released
39
May, 2022
16
May, 2021
12
February, 2023
7
August, 2020
3
September, 2020
2
March, 2020
Available data
39
zippedFastqFolder
36
bed narrowPeak
34
bigWig
32
fastq
bam
22
bigBed narrowPeak
1
tsv
Organism
79
Homo sapiens
Biosample type
49
primary cell
18
cell line
12
tissue
Organ
87
pancreas
79
epithelium
75
kidney
35
artery
35
blood vessel
35
heart
35
vasculature
28
eye
20
connective tissue
20
liver
4
bone element
4
skeleton
3
adipose tissue
2
brain
1
blood
1
bodily fluid
1
musculature of body
1
pituitary gland
1
skin of body
Project
49
HPAP
30
AMP
Genome assembly (visualization)
14
hg19
10
GRCh38
Lab
49
Klaus Kaestner, Upenn
30
AMP-T2D consortium
Audit category:
18
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
primary cell
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
cell line
EndoC_BH1
18
tissue
pigmented layer of retina
12
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