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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
240
ATAC-seq
176
single cell RNA-seq
148
total RNA-seq
87
RNA microarray
40
pCHi-C
28
snATAC-seq
24
Hi-C
11
RRBS
10
MeRIP-seq
10
WGBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNase-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
10
DNA methylation
Date released
7
August, 2017
3
July, 2019
Available data
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
11
fastq
Organism
10
Homo sapiens
Biosample type
primary cell
10
tissue
Organ
4
adipose tissue
4
connective tissue
4
liver
2
heart
Project
10
AMP
Lab
10
AMP-T2D consortium
files.file_type!
bam
biosample_type!
primary cell
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
10 results
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WGBS
tissue
liver
3
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
right lobe of liver
1
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