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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
336
ATAC-seq
262
single cell RNA-seq
215
total RNA-seq
211
ChIP-seq
87
RNA microarray
84
snATAC-seq
53
WGBS
53
pCHi-C
30
Hi-C
19
RRBS
10
MeRIP-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
53
DNA methylation
Date released
41
May, 2022
6
February, 2021
4
August, 2017
2
July, 2019
Available data
41
zippedFastqFolder
bam
16
bed bedMethyl
16
bigBed bedMethyl
16
bigWig
15
fastq
6
tsv
Organism
53
Homo sapiens
Biosample type
47
primary cell
6
tissue
Organ
47
epithelium
47
pancreas
4
adipose tissue
4
connective tissue
liver
2
heart
Project
47
HPAP
6
AMP
Lab
47
Klaus Kaestner, Upenn
6
AMP-T2D consortium
files.file_type!
bam
organ_slims!
liver
BIOSAMPLE
ASSAY
53 results
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WGBS
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
subcutaneous abdominal adipose tissue
3
heart left ventricle
2
adipose tissue
1
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