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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
10
RRBS
9
Hi-C
2
total RNA-seq
Assay category
33
DNA binding
10
DNA methylation
9
3D chromatin structure
2
Transcription
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
3
control
Date released
35
May, 2021
13
July, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
October, 2019
Available data
596
bigWig
bam
288
bed narrowPeak
252
tsv
226
fastq
102
bigBed narrowPeak
99
tagAlign
42
bed broadPeak
42
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
54
Homo sapiens
Biosample type
107
tissue
54
primary cell
33
in vitro differentiated cells
21
cell line
Organ
13
epithelium
5
vasculature
4
blood vessel
4
brain
3
kidney
3
pancreas
2
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
51
AMP
3
HPAP
Genome assembly (visualization)
54
hg19
11
GRCh38
Lab
35
Kyle Gaulton, UCSD
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
2
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
primary cell
CD8-positive, alpha-beta T cell
33
2
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
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