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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
329
ATAC-seq
261
single cell RNA-seq
253
ChIP-seq
242
total RNA-seq
84
snATAC-seq
57
WGBS
47
pCHi-C
29
Hi-C
19
RRBS
5
GRO-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
2
October, 2019
1
August, 2017
Available data
bam
205
bed narrowPeak
205
bigBed narrowPeak
205
bigWig
202
bed broadPeak
202
bigBed broadPeak
200
bed bed3+
12
fastq
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Organ
2
epithelium
2
kidney
1
liver
Project
3
AMP
Lab
3
AMP-T2D consortium
files.file_type!
bam
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inconsistent ontology term
BIOSAMPLE
ASSAY
3 results
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DNase-seq
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
tissue
right lobe of liver
1
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