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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
67
total RNA-seq
47
WGBS
20
ChIP-seq
11
snATAC-seq
8
Hi-C
4
MeRIP-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
80
DNA accessibility
67
Transcription
49
DNA methylation
20
DNA binding
8
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
broad histone mark
8
control
6
narrow histone mark
2
nucleotide modification
Date released
80
May, 2022
56
February, 2023
20
August, 2017
19
September, 2020
8
January, 2021
7
August, 2020
6
February, 2021
6
March, 2020
4
July, 2018
4
March, 2019
4
November, 2020
4
October, 2019
3
October, 2022
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2021
1
November, 2019
1
October, 2017
Available data
bam
570
bigWig
466
fastq
378
tsv
200
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bedpe bed3+
6
bigBed bedMethyl
6
hic
6
txt
3
cool
1
bedpe
1
hdf5
Organism
229
Homo sapiens
Biosample type
152
primary cell
76
tissue
2
cell line
Organ
230
pancreas
207
kidney
181
heart
179
epithelium
110
liver
85
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
42
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
Project
152
HPAP
50
AMP
28
T1D
Genome assembly (visualization)
20
hg19
14
GRCh38
Lab
152
Klaus Kaestner, Upenn
40
AMP-T2D consortium
27
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
audit.ERROR.category!
inconsistent ontology term
award.project!
community
BIOSAMPLE
ASSAY
230 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
Hi-C
MeRIP-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
20
12
20
7
3
4
1
pancreas
1
4
1
1
1
body of pancreas
1
cell line
EndoC_BH1
1
Panc1
1
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