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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
22
ATAC-seq
7
total RNA-seq
4
GRO-seq
2
Capture-C
2
pCHi-C
Assay category
52
DNA binding
22
DNA accessibility
7
Transcription
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
47
May, 2021
14
August, 2017
11
February, 2023
5
August, 2021
4
February, 2021
4
January, 2018
2
October, 2019
1
August, 2018
1
March, 2020
Available data
bam
166
bigWig
137
fastq
119
bed narrowPeak
41
tsv
37
tagAlign
23
bed bed3+
17
bigBed narrowPeak
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
89
Homo sapiens
Biosample type
743
tissue
470
primary cell
89
in vitro differentiated cells
50
cell line
6
stem cell
Organ
34
connective tissue
1
adipose tissue
1
embryo
Project
89
AMP
Genome assembly (visualization)
24
hg19
4
hg18
Lab
47
Kyle Gaulton, UCSD
36
AMP-T2D consortium
6
Struan F.A. Grant, CHOP
Audit category:
inconsistent ontology term
2
audit script error
files.file_type!
bam
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Capture-C
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
6
5
1
adipocyte
14
8
1
1
chondrocyte
5
osteoblast
1
1
preadipocyte
1
1
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