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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
4
Hi-C
4
STARR-seq
1
ATAC-seq
1
whole genome sequencing assay
Assay category
18
DNA binding
10
Transcription
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
35
August, 2021
2
March, 2019
1
March, 2023
Available data
14
bed narrowPeak
14
bigWig
10
tsv
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
38
Homo sapiens
Biosample type
33
cell line
4
tissue
1
primary cell
Organ
31
liver
4
pancreas
2
kidney
Project
37
AMP
1
ITG
Genome assembly (visualization)
17
hg19
2
GRCh38
Lab
593
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
138
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
19
Xin Sun, UCSD
6
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
4
Rohit N. Kulkarni, M.D., Ph.D.
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
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BIOSAMPLE
ASSAY
38 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
ATAC-seq
whole genome sequencing assay
cell line
HepG2
18
9
1
2
1
HEK293T
2
tissue
islet of Langerhans
1
2
1
primary cell
chondrocytes
1
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