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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
16
pCHi-C
9
total RNA-seq
5
ATAC-seq
1
DNAme array
Assay category
74
DNA binding
9
Transcription
5
DNA accessibility
1
DNA methylation
Target of assay
54
histone
54
histone modification
32
broad histone mark
22
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
267
August, 2021
194
February, 2023
176
May, 2022
129
August, 2017
105
May, 2021
62
October, 2019
59
February, 2021
59
September, 2020
58
May, 2020
47
September, 2023
36
March, 2020
24
February, 2020
24
July, 2019
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
8
January, 2018
8
October, 2017
7
August, 2020
5
March, 2023
4
July, 2018
4
March, 2019
4
November, 2020
4
October, 2022
3
December, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
November, 2019
1
September, 2018
Available data
230
bigWig
bam
129
bed narrowPeak
104
tsv
87
tagAlign
2
bed bed3+
Organism
105
Homo sapiens
Biosample type
56
primary cell
47
in vitro differentiated cells
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
89
AMP
16
T1D
Genome assembly (visualization)
40
hg19
Lab
99
Kyle Gaulton, UCSD
6
AMP-T2D consortium
Audit category:
inconsistent ontology term
files.file_type!
bam
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
105 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
ATAC-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
1
2
monocyte
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 9 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
pancreas
1
thymus
1
See all biosamples
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