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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
6
single cell RNA-seq
5
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
35
DNA accessibility
9
Transcription
5
3D chromatin structure
Date released
35
February, 2023
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
1
October, 2019
Available data
bam
150
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
68
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
50
Homo sapiens
Biosample type
46
tissue
4
primary cell
Organ
230
pancreas
207
kidney
179
epithelium
141
heart
110
liver
85
connective tissue
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
42
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
Project
50
AMP
Genome assembly (visualization)
35
GRCh38
5
hg19
Lab
50
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bam
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
50 results
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ATAC-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
pulmonary artery
2
ascending aorta
1
tibial artery
1
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
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