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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
18
DNA accessibility
1
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
16
May, 2021
6
November, 2020
4
March, 2020
3
August, 2021
1
November, 2019
Available data
bam
58
bigWig
39
tsv
21
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
30
Homo sapiens
Biosample type
87
tissue
30
cell line
14
in vitro differentiated cells
9
primary cell
1
stem cell
Organ
27
epithelium
27
pancreas
2
kidney
Project
30
AMP
Genome assembly (visualization)
3
hg19
Lab
23
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
30
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
30 results
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ATAC-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
18
6
2
1
RCC 7860 VHL
1
RCC 7860 vector
1
Synthesized DNA
1
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