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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ATAC-seq
37
ChIP-seq
10
RRBS
6
Hi-C
5
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
1
DNAme array
Assay category
69
DNA accessibility
37
DNA binding
11
DNA methylation
7
Transcription
6
3D chromatin structure
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
3
control
Date released
57
May, 2020
41
May, 2021
13
July, 2019
12
February, 2023
3
October, 2019
1
August, 2017
1
March, 2020
1
November, 2018
1
September, 2018
Available data
bam
423
bigWig
240
fastq
211
bed narrowPeak
168
tsv
109
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
130
Homo sapiens
Biosample type
765
tissue
130
primary cell
103
in vitro differentiated cells
73
cell line
5
stem cell
Organ
12
epithelium
5
kidney
5
vasculature
4
blood vessel
4
brain
2
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
277
HPAP
130
AMP
24
T1D
1
ITG
Genome assembly (visualization)
51
hg19
Lab
95
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bam
assay_title!
WGBS
BIOSAMPLE
ASSAY
130 results
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Clear Filters
ATAC-seq
ChIP-seq
RRBS
Hi-C
total RNA-seq
DNase-seq
single cell RNA-seq
DNAme array
primary cell
CD8-positive, alpha-beta T cell
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
22
2
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
gabaergic neuron
3
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