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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
59
total RNA-seq
6
snATAC-seq
5
ChIP-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
70
DNA accessibility
5
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
4
control
1
broad histone mark
1
histone
1
histone modification
Date released
254
August, 2021
109
August, 2017
103
February, 2023
98
February, 2021
65
May, 2021
60
October, 2019
58
May, 2020
42
March, 2020
25
February, 2020
22
July, 2019
22
May, 2022
15
May, 2023
13
November, 2017
10
November, 2020
7
October, 2017
5
December, 2019
4
July, 2018
4
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
October, 2022
1
September, 2018
Available data
123
tsv
106
bed narrowPeak
64
xls
57
txt
bam
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
253
Homo sapiens
Biosample type
229
tissue
22
cell line
3
in vitro differentiated cells
Organ
130
kidney
92
heart
17
liver
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
2
artery
2
epithelium
1
adipose tissue
Project
254
AMP
Genome assembly (visualization)
64
GRCh38
4
hg19
Lab
128
Katalin Susztak, Upenn
102
AMP-T2D consortium
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bam
bigWig
BIOSAMPLE
ASSAY
254 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
neural progenitor cell
1
osteoblast
1
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