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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
16
ATAC-seq
14
total RNA-seq
4
pCHi-C
3
Hi-C
2
DNase-seq
Assay category
23
DNA binding
18
DNA accessibility
14
Transcription
3
3D chromatin structure
Target of assay
23
histone
23
histone modification
23
narrow histone mark
Date released
267
August, 2021
129
August, 2017
95
February, 2023
89
May, 2021
62
October, 2019
58
May, 2020
42
May, 2022
40
May, 2024
34
March, 2020
24
February, 2020
24
July, 2019
15
May, 2023
14
February, 2021
14
November, 2017
8
January, 2018
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
November, 2019
1
October, 2022
1
September, 2018
Available data
bam
193
bigWig
176
bed narrowPeak
70
bigBed narrowPeak
49
tagAlign
11
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
2
hic
1
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
62
Homo sapiens
Biosample type
56
tissue
3
primary cell
2
in vitro differentiated cells
1
cell line
Organ
21
eye
4
connective tissue
4
gonad
4
ovary
4
pancreas
3
brain
3
epithelium
2
kidney
1
adipose tissue
1
blood vessel
1
heart
1
limb
1
lymph node
1
pituitary gland
1
skin of body
1
vasculature
1
vein
Project
62
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
62 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
DNase-seq
tissue
islet of Langerhans
21
13
14
4
adipose tissue
1
dorsal plus ventral thalamus
1
heart
1
planum polare
1
primary cell
endothelial cell of umbilical vein
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
in vitro differentiated cells
adipocyte
2
cell line
Panc1
1
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