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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
331
ATAC-seq
261
single cell RNA-seq
236
total RNA-seq
201
ChIP-seq
87
RNA microarray
84
snATAC-seq
57
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
10
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
331
DNA accessibility
Date released
91
February, 2023
64
August, 2021
59
May, 2022
55
May, 2020
16
May, 2021
14
October, 2019
11
May, 2023
7
August, 2020
4
March, 2020
3
January, 2018
3
March, 2019
3
September, 2020
1
October, 2017
Available data
257
bed narrowPeak
bam
124
bigWig
64
xls
61
fastq
39
zippedFastqFolder
25
bigBed narrowPeak
14
tsv
7
bed bed3
2
bed broadPeak
Organism
331
Homo sapiens
Biosample type
196
tissue
116
primary cell
in vitro differentiated cells
19
cell line
Organ
87
pancreas
79
epithelium
75
kidney
35
artery
35
blood vessel
35
heart
35
vasculature
28
eye
20
liver
4
bone element
4
skeleton
3
adipose tissue
3
connective tissue
2
brain
1
blood
1
bodily fluid
1
musculature of body
1
pituitary gland
1
skin of body
Project
271
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
123
GRCh38
64
hg19
Lab
172
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
11
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
24
inconsistent ontology term
files.file_type!
bam
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
331 results
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Clear Filters
ATAC-seq
tissue
kidney
75
coronary artery
35
islet of Langerhans
30
liver
20
retina
15
+ See 8 more…
primary cell
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
macrophage
11
+ See 5 more…
cell line
EndoC_BH1
18
GM12878
1
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