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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
14
ATAC-seq
14
total RNA-seq
4
pCHi-C
3
Hi-C
2
DNase-seq
Assay category
23
DNA binding
16
DNA accessibility
14
Transcription
3
3D chromatin structure
Target of assay
23
histone
23
histone modification
23
narrow histone mark
Date released
265
August, 2021
189
February, 2023
176
May, 2022
139
February, 2021
115
August, 2017
75
May, 2021
60
October, 2019
59
September, 2020
58
May, 2020
47
September, 2023
42
March, 2020
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
October, 2017
7
August, 2020
5
March, 2023
4
January, 2018
4
July, 2018
4
March, 2019
4
October, 2022
3
December, 2019
2
November, 2019
1
April, 2019
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
203
bigWig
187
bed narrowPeak
68
bigBed narrowPeak
49
tagAlign
14
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
2
hic
1
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
60
Homo sapiens
Biosample type
56
tissue
in vitro differentiated cells
3
primary cell
1
cell line
Organ
21
eye
4
gonad
4
ovary
4
pancreas
3
brain
3
epithelium
2
connective tissue
2
kidney
1
adipose tissue
1
blood vessel
1
heart
1
limb
1
lymph node
1
pituitary gland
1
skin of body
1
vasculature
1
vein
Project
60
AMP
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bam
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
60 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
DNase-seq
tissue
islet of Langerhans
21
13
14
4
adipose tissue
1
dorsal plus ventral thalamus
1
heart
1
planum polare
1
primary cell
endothelial cell of umbilical vein
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
Panc1
1
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