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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
9
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
19
DNA binding
9
Transcription
2
3D chromatin structure
1
DNA sequencing
Target of assay
12
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
31
August, 2021
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2017
Available data
367
fastq
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
35
Homo sapiens
Biosample type
73
tissue
35
cell line
2
primary cell
Organ
35
liver
29
pancreas
28
epithelium
4
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
35
AMP
Genome assembly (visualization)
16
hg19
Lab
31
Bing Ren, UCSD
4
AMP-T2D consortium
files.file_type!
bam
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
19
9
2
2
2
1
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