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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
18
DNA accessibility
2
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
16
May, 2021
6
November, 2020
2
August, 2021
2
March, 2020
1
February, 2023
1
November, 2019
1
October, 2019
Available data
bam
56
bigWig
34
tsv
21
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
28
Homo sapiens
Biosample type
152
primary cell
76
tissue
29
cell line
Organ
35
liver
29
pancreas
28
epithelium
4
kidney
1
blood
1
bodily fluid
1
mammary gland
Project
29
AMP
Genome assembly (visualization)
4
hg19
1
GRCh38
Lab
23
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
bam
BIOSAMPLE
ASSAY
29 results
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ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
18
6
2
1
1
Panc1
1
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