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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
25
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
Assay category
52
DNA binding
25
DNA accessibility
Transcription
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
12
transcription factor
7
control
5
RNA binding protein
Date released
42
May, 2021
14
August, 2017
12
February, 2023
6
March, 2020
5
August, 2021
4
February, 2021
4
January, 2018
4
October, 2019
1
August, 2018
Available data
bam
132
bed narrowPeak
132
bigWig
126
fastq
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
92
Homo sapiens
Biosample type
526
tissue
295
primary cell
92
in vitro differentiated cells
69
cell line
5
stem cell
Organ
34
connective tissue
1
adipose tissue
1
embryo
Project
92
AMP
Genome assembly (visualization)
33
hg19
4
hg18
Lab
43
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
10
inconsistent ontology term
files.file_type!
bam
assay_slims!
Transcription
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
in vitro differentiated cells
embryonic stem cell
37
6
1
adipocyte
14
8
1
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
2
immature adipocyte
2
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