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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ATAC-seq
15
ChIP-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
4
total RNA-seq
2
single cell RNA-seq
Assay category
15
DNA accessibility
15
DNA binding
6
Transcription
4
3D chromatin structure
Target of assay
13
histone
13
histone modification
9
broad histone mark
4
narrow histone mark
2
control
Date released
14
August, 2017
13
February, 2023
6
March, 2020
4
February, 2021
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
1
August, 2021
Available data
bam
249
bigWig
141
fastq
131
tsv
128
bed narrowPeak
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bedpe bed3+
5
bed bed3
4
bed bedgraph
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
49
Homo sapiens
Biosample type
543
tissue
95
primary cell
49
in vitro differentiated cells
33
cell line
5
stem cell
Organ
34
connective tissue
1
adipose tissue
1
embryo
Project
49
AMP
Genome assembly (visualization)
21
hg19
4
hg18
Lab
49
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
2
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
49 results
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ATAC-seq
ChIP-seq
pCHi-C
GRO-seq
Hi-C
total RNA-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte
7
14
1
cardiomyocytes (cardiac muscle cell)
2
2
2
chondrocyte
5
immature adipocyte
2
2
lymphocyte of B lineage (iPSC)
1
1
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