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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ATAC-seq
95
total RNA-seq
87
single cell RNA-seq
56
snATAC-seq
47
WGBS
16
pCHi-C
10
RRBS
6
Hi-C
4
ChIP-seq
2
DNase-seq
1
DNAme array
Assay category
182
Transcription
164
DNA accessibility
58
DNA methylation
6
3D chromatin structure
4
DNA binding
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Date released
134
May, 2022
88
February, 2023
57
May, 2020
56
September, 2020
45
February, 2021
22
May, 2021
9
July, 2019
8
January, 2021
3
October, 2019
3
October, 2022
1
August, 2017
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
bigWig
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
430
Homo sapiens
Biosample type
782
tissue
430
primary cell
87
in vitro differentiated cells
62
cell line
6
stem cell
Organ
152
epithelium
142
pancreas
8
blood
8
bodily fluid
5
kidney
3
vasculature
2
blood vessel
2
connective tissue
2
vein
1
bone element
1
bone marrow
1
brain
1
eye
1
heart
1
liver
1
musculature of body
Project
314
HPAP
91
AMP
24
T1D
1
ITG
Genome assembly (visualization)
15
hg19
1
GRCh38
Lab
314
Klaus Kaestner, Upenn
91
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
9
inconsistent ontology term
files.file_type!
bam
bigWig
BIOSAMPLE
ASSAY
430 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
RRBS
Hi-C
ChIP-seq
DNase-seq
DNAme array
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
1
2
CD4-positive, alpha-beta memory T cell
22
macrophage
11
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
monocyte
1
1
1
1
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
neutrophil
1
1
1
oligodendrocyte
3
CD4-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
pancreatic cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
cardiac fibroblast
1
cardiac muscle cell
1
chondrocytes
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
erythroblast
1
hepatocyte
1
inflammatory macrophage
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
megakaryocyte
1
naive B cel
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
renal cortical epithelial cell
1
retinal pigment epithelial cell
1
skeletal muscle cell
1
skeletal muscle myoblast
1
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