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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
174
single cell RNA-seq
145
ChIP-seq
130
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
304
Transcription
225
DNA accessibility
145
DNA binding
16
3D chromatin structure
11
DNA methylation
Target of assay
127
histone
127
histone modification
66
narrow histone mark
61
broad histone mark
20
control
2
nucleotide modification
Date released
229
August, 2021
107
August, 2017
95
February, 2023
93
February, 2021
56
October, 2019
47
September, 2023
42
May, 2022
31
March, 2020
25
February, 2020
19
April, 2020
15
May, 2023
13
November, 2017
10
July, 2019
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1716
bigWig
1076
tsv
944
bed narrowPeak
561
bigBed narrowPeak
367
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
818
Homo sapiens
Biosample type
820
tissue
432
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
201
kidney
139
heart
92
bone element
76
pancreas
69
liver
53
eye
46
blood vessel
46
vasculature
45
connective tissue
44
adipose tissue
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
725
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
116
GRCh38
107
hg19
Lab
533
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bam
assay_title!
WGBS
BIOSAMPLE
ASSAY
820 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
30
41
26
7
4
3
1
4
bone element
84
liver
20
1
23
20
1
1
1
coronary artery
35
1
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