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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ATAC-seq
24
ChIP-seq
11
Hi-C
9
RRBS
1
snATAC-seq
1
total RNA-seq
Assay category
62
DNA accessibility
24
DNA binding
11
3D chromatin structure
9
DNA methylation
1
Transcription
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
Date released
33
February, 2023
23
August, 2017
21
May, 2022
9
March, 2020
6
July, 2019
4
October, 2019
3
March, 2019
2
January, 2018
1
April, 2019
1
August, 2021
1
May, 2023
1
November, 2017
1
November, 2019
1
October, 2017
Available data
bam
1647
bigWig
918
tsv
777
bed narrowPeak
493
bigBed narrowPeak
294
fastq
196
bed broadPeak
189
bed bed3+
160
bigBed broadPeak
105
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
107
Homo sapiens
Biosample type
107
tissue
54
primary cell
33
in vitro differentiated cells
21
cell line
Organ
27
eye
22
liver
19
musculature of body
16
pancreas
12
epithelium
5
adipose tissue
5
brain
5
connective tissue
5
heart
4
bone element
4
skeleton
2
kidney
1
blood vessel
1
pericardium
1
vasculature
Project
107
AMP
Genome assembly (visualization)
116
GRCh38
107
hg19
Lab
82
AMP-T2D consortium
20
Karen Mohlke, UNC
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
107 results
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ATAC-seq
ChIP-seq
Hi-C
RRBS
snATAC-seq
total RNA-seq
tissue
liver
20
1
1
skeletal muscle tissue
1
13
2
1
retina
15
islet of Langerhans
5
6
2
1
pigmented layer of retina
12
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