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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
20
ChIP-seq
14
total RNA-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
2
RRBS
1
pCHi-C
Assay category
31
DNA accessibility
20
DNA binding
14
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
14
histone
14
histone modification
8
broad histone mark
8
control
6
narrow histone mark
2
nucleotide modification
Date released
20
August, 2017
18
February, 2023
8
January, 2021
6
March, 2020
4
July, 2018
4
March, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2021
1
November, 2019
1
October, 2017
Available data
bam
373
bigWig
275
tsv
213
fastq
123
bed narrowPeak
62
bigBed narrowPeak
27
bed bed3+
20
bed broadPeak
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
76
Homo sapiens
Biosample type
152
primary cell
76
tissue
29
cell line
Organ
201
kidney
141
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
48
AMP
28
T1D
Genome assembly (visualization)
16
hg19
3
GRCh38
Lab
38
AMP-T2D consortium
27
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
76 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
RRBS
pCHi-C
tissue
islet of Langerhans
20
20
12
7
3
4
1
pancreas
1
4
1
1
1
body of pancreas
1
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